#!/bin/bash -ex

# Last changed Tue Oct 30 17:55:03 EDT 2007

trap '
SAVEDSTATUS=$?
set +x
if [ x$CLEANEXIT = x ]
then
	echo "$0: ERROR Unexpected exit with return value of $SAVEDSTATUS"
	exit $SAVEDSTATUS
fi' EXIT

#-----

R --no-save << EOF

install.packages(c("akima"), repos="http://cran.us.r-project.org")
install.packages(c("assist"), repos="http://cran.us.r-project.org")
install.packages(c("brlr"), repos="http://cran.us.r-project.org")
install.packages(c("car"), repos="http://cran.us.r-project.org")
install.packages(c("CircStats"), repos="http://cran.us.r-project.org")
install.packages(c("clines"), repos="http://cran.us.r-project.org")
install.packages(c("cluster"), repos="http://cran.us.r-project.org")
install.packages(c("coda"), repos="http://cran.us.r-project.org")
install.packages(c("combinat"), repos="http://cran.us.r-project.org")
install.packages(c("covRobust"), repos="http://cran.us.r-project.org")
install.packages(c("Design"), repos="http://cran.us.r-project.org")
install.packages(c("diptest"), repos="http://cran.us.r-project.org")
install.packages(c("e1071"), repos="http://cran.us.r-project.org")
install.packages(c("effects"), repos="http://cran.us.r-project.org")
install.packages(c("effects"), repos="http://cran.us.r-project.org")
install.packages(c("ellipse"), repos="http://cran.us.r-project.org")
install.packages(c("emplik"), repos="http://cran.us.r-project.org")
install.packages(c("energy"), repos="http://cran.us.r-project.org")
install.packages(c("evd"), repos="http://cran.us.r-project.org")
install.packages(c("exactLoglinTest"), repos="http://cran.us.r-project.org")
install.packages(c("exactRankTests"), repos="http://cran.us.r-project.org")
install.packages(c("fastICA"), repos="http://cran.us.r-project.org")
install.packages(c("fda"), repos="http://cran.us.r-project.org")
install.packages(c("fork"), repos="http://cran.us.r-project.org")
install.packages(c("g.data"), repos="http://cran.us.r-project.org")
install.packages(c("gee"), repos="http://cran.us.r-project.org")
install.packages(c("geepack"), repos="http://cran.us.r-project.org")
install.packages(c("genetics"), repos="http://cran.us.r-project.org")
install.packages(c("GeneTS"), repos="http://cran.us.r-project.org")
install.packages(c("glmmML"), repos="http://cran.us.r-project.org")
install.packages(c("gregmisc"), repos="http://cran.us.r-project.org")
install.packages(c("gss"), repos="http://cran.us.r-project.org")
install.packages(c("Hmisc"), repos="http://cran.us.r-project.org")
install.packages(c("ipred"), repos="http://cran.us.r-project.org")
install.packages(c("ISwR"), repos="http://cran.us.r-project.org")
install.packages(c("kernlab"), repos="http://cran.us.r-project.org")
install.packages(c("lars"), repos="http://cran.us.r-project.org")
install.packages(c("lasso2"), repos="http://cran.us.r-project.org")
install.packages(c("leaps"), repos="http://cran.us.r-project.org")
install.packages(c("lme4"), repos="http://cran.us.r-project.org")
install.packages(c("locfit"), repos="http://cran.us.r-project.org")
install.packages(c("logistf"), repos="http://cran.us.r-project.org")
install.packages(c("logspline"), repos="http://cran.us.r-project.org")
install.packages(c("mclust"), repos="http://cran.us.r-project.org")
install.packages(c("MCMCpack"), repos="http://cran.us.r-project.org")
install.packages(c("mda"), repos="http://cran.us.r-project.org")
install.packages(c("mix"), repos="http://cran.us.r-project.org")
install.packages(c("multcomp"), repos="http://cran.us.r-project.org")
install.packages(c("mvnormtest"), repos="http://cran.us.r-project.org")
install.packages(c("mvtnorm"), repos="http://cran.us.r-project.org")
install.packages(c("nortest"), repos="http://cran.us.r-project.org")
install.packages(c("pamr"), repos="http://cran.us.r-project.org")
install.packages(c("panel"), repos="http://cran.us.r-project.org")
install.packages(c("pastecs"), repos="http://cran.us.r-project.org")
install.packages(c("polspline"), repos="http://cran.us.r-project.org")
install.packages(c("pps"), repos="http://cran.us.r-project.org")
install.packages(c("pspline"), repos="http://cran.us.r-project.org")
install.packages(c("quantreg"), repos="http://cran.us.r-project.org")
install.packages(c("randomForest"), repos="http://cran.us.r-project.org")
install.packages(c("Rcmdr"), repos="http://cran.us.r-project.org")
install.packages(c("SASmixed"), repos="http://cran.us.r-project.org")
install.packages(c("session"), repos="http://cran.us.r-project.org")
install.packages(c("sm"), repos="http://cran.us.r-project.org")
install.packages(c("sma"), repos="http://cran.us.r-project.org")
install.packages(c("SuppDists"), repos="http://cran.us.r-project.org")
install.packages(c("tensor"), repos="http://cran.us.r-project.org")
install.packages(c("tree"), repos="http://cran.us.r-project.org")
install.packages(c("tseries"), repos="http://cran.us.r-project.org")
install.packages(c("wavethresh"), repos="http://cran.us.r-project.org")
install.packages(c("wle"), repos="http://cran.us.r-project.org")
install.packages(c("xgobi"), repos="http://cran.us.r-project.org")
install.packages(c("xtable"), repos="http://cran.us.r-project.org")
install.packages(c("zicounts"), repos="http://cran.us.r-project.org")

install.packages("VGAM", repos="http://www.stat.auckland.ac.nz/~yee")

# Mapping packages for Daniels

install.packages(c("geoR"), repos="http://cran.us.r-project.org")
install.packages(c("geoRglm"), repos="http://cran.us.r-project.org")
install.packages(c("gstat"), repos="http://cran.us.r-project.org")
install.packages(c("maps"), repos="http://cran.us.r-project.org")
install.packages(c("maptools"), repos="http://cran.us.r-project.org")
install.packages(c("spatstat"), repos="http://cran.us.r-project.org")
install.packages(c("splancs"), repos="http://cran.us.r-project.org")
install.packages(c("sp"), repos="http://cran.us.r-project.org")
install.packages(c("spBayes"), repos="http://cran.us.r-project.org")

source("http://bioconductor.org/getBioC.R")
getBioC()

quit()
EOF

#-----

CLEANEXIT=1
exit 0