Package Index

Packages in the standard library

CircStats Circular Statistics

Design Design Package

GeneTS Microarray Time Series and Network Analysis

Hmisc Harrell Miscellaneous

ISwR Introductory Statistics with R

KernSmooth Functions for kernel smoothing for Wand & Jones (1995)

MASS Main Package of Venables and Ripley's MASS

MCMCpack Markov chain Monte Carlo (MCMC) Package

Rcmdr R Commander

SASmixed Data sets from "SAS System for Mixed Models"

SuppDists Supplementary distributions

VGAM Vector Generalized Linear and Additive Models

adapt adapt -- multidimensional numerical integration

akima Interpolation of irregularly spaced data

assist A Suite of S-Plus Functions Implementing Smoothing Splines

base The R Base Package

boot Bootstrap R (S-Plus) Functions (Canty)

brlr Bias-reduced logistic regression

car Companion to Applied Regression

class Functions for Classification

clines Calculates Contour Lines

cluster Cluster Analysis Extended Rousseeuw et al.

coda Output analysis and diagnostics for MCMC

combinat combinatorics utilities

covRobust Robust Covariance Estimation via Nearest Neighbor Cleaning

datasets The R Datasets Package

diptest Hartigan's dip test statistic for unimodality - corrected code

e1071 Misc Functions of the Department of Statistics (e1071), TU Wien

effects Effect Displays for Linear and Generalized Linear Models

ellipse Functions for drawing ellipses and ellipse-like confidence regions

emplik Empirical likelihood ratio for censored/truncated data

energy E-statistics (energy statistics) tests of fit, clustering

evd Functions for extreme value distributions

exactLoglinTest Monte Carlo Exact Tests for Log-linear models

exactRankTests Exact Distributions for Rank and Permutation Tests

fastICA FastICA algorithms to perform ICA and Projection Pursuit

fda Functional Data Analysis

foreign Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, ...

fork R functions for handling multiple processes.

g.data Delayed-Data Packages

gee Generalized Estimation Equation solver

geepack Generalized Estimating Equation Package

genetics Population Genetics

glmmML Generalized linear models with random intercept

grDevices The R Graphics Devices and Support for Colours and Fonts

graphics The R Graphics Package

gregmisc Backword compatibility package for gregmisc bundle

grid The Grid Graphics Package

gss General Smoothing Splines

ipred Improved Predictors

kernlab Kernel Methods Lab

lars Least Angle Regression, Lasso and Forward Stagewise

lasso2 L1 constrained estimation aka `lasso'

lattice Lattice Graphics

leaps regression subset selection

locfit Local Regression, Likelihood and Density Estimation.

logistf Firth's bias reduced logistic regression

logspline Logspline density estimation routines

mclust Model-based cluster analysis

mda Mixture and flexible discriminant analysis

methods Formal Methods and Classes

mgcv GAMs with GCV smoothness estimation and GAMMs by REML/PQL

mix Estimation/multiple Imputation for Mixed Categorical and Continuous Data

multcomp Multiple Tests and Simultaneous Confidence Intervals

mvnormtest Normality test for multivariate variables

mvtnorm Multivariate Normal and T Distribution

nlme Linear and nonlinear mixed effects models

nnet Feed-forward Neural Networks and Multinomial Log-Linear Models

nortest Tests for Normality

pamr Pam: prediction analysis for microarrays

panel Panel

pastecs Package for Analysis of Space-Time Ecological Series

polspline Polynomial spline routines

pps Functions for PPS sampling

pspline Penalized Smoothing Splines

quantreg Quantile Regression

randomForest Breiman and Cutler's random forests for classification and regression

rpart Recursive Partitioning

session Functions for interacting with, saving and restoring R sessions.

sm kernel smoothing methods: Bowman & Azzalini (1997)

sma Statistical Microarray Analysis

spatial Functions for Kriging and Point Pattern Analysis

splines Regression Spline Functions and Classes

stats The R Stats Package

stats4 Statistical functions using S4 classes

survival Survival analysis, including penalised likelihood.

tcltk Tcl/Tk Interface

tensor Tensor product of arrays

tools Tools for Package Development

tree Classification and regression trees

tseries Time series analysis and computational finance

utils The R Utils Package

wavethresh Software to perform wavelet statistics and transforms.

wle Weighted Likelihood Estimation

xgobi Interface to the XGobi and XGvis programs for graphical data analysis

xtable Export tables to LaTeX or HTML

zicounts Counts data models: zero-inflation as well as interval icensored

CircStats	Circular Statistics
Design	Design Package
GeneTS	Microarray Time Series and Network Analysis
Hmisc	Harrell Miscellaneous
ISwR	Introductory Statistics with R
KernSmooth	Functions for kernel smoothing for Wand & Jones (1995)
MASS	Main Package of Venables and Ripley's MASS
MCMCpack	Markov chain Monte Carlo (MCMC) Package
Rcmdr	R Commander
SASmixed	Data sets from "SAS System for Mixed Models"
SuppDists	Supplementary distributions
VGAM	Vector Generalized Linear and Additive Models
adapt	adapt -- multidimensional numerical integration
akima	Interpolation of irregularly spaced data
assist	A Suite of S-Plus Functions Implementing Smoothing Splines
base	The R Base Package
boot	Bootstrap R (S-Plus) Functions (Canty)
brlr	Bias-reduced logistic regression
car	Companion to Applied Regression
class	Functions for Classification
clines	Calculates Contour Lines
cluster	Cluster Analysis Extended Rousseeuw et al.
coda	Output analysis and diagnostics for MCMC
combinat	combinatorics utilities
covRobust	Robust Covariance Estimation via Nearest Neighbor Cleaning
datasets	The R Datasets Package
diptest	Hartigan's dip test statistic for unimodality - corrected code
e1071	Misc Functions of the Department of Statistics (e1071), TU Wien
effects	Effect Displays for Linear and Generalized Linear Models
ellipse	Functions for drawing ellipses and ellipse-like confidence regions
emplik	Empirical likelihood ratio for censored/truncated data
energy	E-statistics (energy statistics) tests of fit, clustering
evd	Functions for extreme value distributions
exactLoglinTest	Monte Carlo Exact Tests for Log-linear models
exactRankTests	Exact Distributions for Rank and Permutation Tests
fastICA	FastICA algorithms to perform ICA and Projection Pursuit
fda	Functional Data Analysis
foreign	Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, ...
fork	R functions for handling multiple processes.
g.data	Delayed-Data Packages
gee	Generalized Estimation Equation solver
geepack	Generalized Estimating Equation Package
genetics	Population Genetics
glmmML	Generalized linear models with random intercept
grDevices	The R Graphics Devices and Support for Colours and Fonts
graphics	The R Graphics Package
gregmisc	Backword compatibility package for gregmisc bundle
grid	The Grid Graphics Package
gss	General Smoothing Splines
ipred	Improved Predictors
kernlab	Kernel Methods Lab
lars	Least Angle Regression, Lasso and Forward Stagewise
lasso2	L1 constrained estimation aka `lasso'
lattice	Lattice Graphics
leaps	regression subset selection
locfit	Local Regression, Likelihood and Density Estimation.
logistf	Firth's bias reduced logistic regression
logspline	Logspline density estimation routines
mclust	Model-based cluster analysis
mda	Mixture and flexible discriminant analysis
methods	Formal Methods and Classes
mgcv	GAMs with GCV smoothness estimation and GAMMs by REML/PQL
mix	Estimation/multiple Imputation for Mixed Categorical and Continuous Data
multcomp	Multiple Tests and Simultaneous Confidence Intervals
mvnormtest	Normality test for multivariate variables
mvtnorm	Multivariate Normal and T Distribution
nlme	Linear and nonlinear mixed effects models
nnet	Feed-forward Neural Networks and Multinomial Log-Linear Models
nortest	Tests for Normality
pamr	Pam: prediction analysis for microarrays
panel	Panel
pastecs	Package for Analysis of Space-Time Ecological Series
polspline	Polynomial spline routines
pps	Functions for PPS sampling
pspline	Penalized Smoothing Splines
quantreg	Quantile Regression
randomForest	Breiman and Cutler's random forests for classification and regression
rpart	Recursive Partitioning
session	Functions for interacting with, saving and restoring R sessions.
sm	kernel smoothing methods: Bowman & Azzalini (1997)
sma	Statistical Microarray Analysis
spatial	Functions for Kriging and Point Pattern Analysis
splines	Regression Spline Functions and Classes
stats	The R Stats Package
stats4	Statistical functions using S4 classes
survival	Survival analysis, including penalised likelihood.
tcltk	Tcl/Tk Interface
tensor	Tensor product of arrays
tools	Tools for Package Development
tree	Classification and regression trees
tseries	Time series analysis and computational finance
utils	The R Utils Package
wavethresh	Software to perform wavelet statistics and transforms.
wle	Weighted Likelihood Estimation
xgobi	Interface to the XGobi and XGvis programs for graphical data analysis
xtable	Export tables to LaTeX or HTML
zicounts	Counts data models: zero-inflation as well as interval icensored